<tt>HARMONY</tt> Components



next up previous
Next: HARMONY for the Up: Living in HARMONY: Spherical Previous: HARMONY for Everyone

HARMONY Components

HARMONY is composed of the following modules:

tri
Does consistency checks on MSMS surfaces. Reports genus and triangle statistics, and prunes small triangles.
tmap
Maps surface to a sphere.
makemap
Computes rectangular integration grid in spherical coordinates.
fitsurf
Computes spherical harmonic expansion coefficients using integration grid.
mksurf
Computes spherical harmonic surfaces from coefficients.

Auxiliary tools not part of HARMONY include:

msms
Computes molecular surfaces from atom coordinates and atom radii.
AVS
The data-flow visualization system from AVS Inc.
AVStool
A programmable Perl interface to AVS.
AVStk
An experimental implementation of AVStool in TCL/TK. (Many thanks to Joel O. Yng for the initial translation.)
mkavsheader
An AWK script to generate AVS field header files from HARMONY output.



next up previous
Next: HARMONY for the Up: Living in HARMONY: Spherical Previous: HARMONY for Everyone



Bruce Duncan
Tue Feb 21 15:12:21 PST 1995