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PostPosted: Sat Feb 18, 2012 6:35 am 
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Joined: Fri Feb 17, 2012 8:14 am
Posts: 4
I have been trying to get vina to do a virtual screening for me
I have modified the vina_screen_local.sh script
with the line:
for f in ligand_*.pdbqt; do
to
for f in ZINC*.pdbqt; do
in order to fit my ligands naming which were from the ZINC

And i keep getting this error: SyntaxError: invalid syntax

it has the same problem even if tested the original script with a few of my ligands renamed as ligand_01 to ligand_05
Please advise what should i do

nic@nic-SC151:~/common/Urease/Drug Screening/UreG/vina$ pythonsh vina_screen_local.sh
setting PYTHONHOME environment
File "vina_screen_local.sh", line 3
for f in ZINC*.pdbqt; do
^
SyntaxError: invalid syntax


ZINC01675990.pdbqt ZINC05581974.pdbqt ZINC29590315.pdbqt
ZINC01676023.pdbqt ZINC05594334.pdbqt ZINC29590323.pdbqt


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