Joined: Fri Feb 17, 2012 8:14 am Posts: 4
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I have been trying to get vina to do a virtual screening for me I have modified the vina_screen_local.sh script with the line: for f in ligand_*.pdbqt; do to for f in ZINC*.pdbqt; do in order to fit my ligands naming which were from the ZINC
And i keep getting this error: SyntaxError: invalid syntax
it has the same problem even if tested the original script with a few of my ligands renamed as ligand_01 to ligand_05 Please advise what should i do
nic@nic-SC151:~/common/Urease/Drug Screening/UreG/vina$ pythonsh vina_screen_local.sh setting PYTHONHOME environment File "vina_screen_local.sh", line 3 for f in ZINC*.pdbqt; do ^ SyntaxError: invalid syntax
ZINC01675990.pdbqt ZINC05581974.pdbqt ZINC29590315.pdbqt ZINC01676023.pdbqt ZINC05594334.pdbqt ZINC29590323.pdbqt
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