The Molecular Graphics Laboratory Forum

High Positive Interaction Energy
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Author:  bmanna [ Mon Jul 17, 2017 9:12 am ]
Post subject:  High Positive Interaction Energy

Hi all,

I am new to Docking and AutoDock. I am performing an experiment with a protein and a lipopeptide as its ligand. But, the binding energy is always positive and high. The receptor has no defined interaction site with the ligand and I have assigned the docking site based on its interaction with other ligands from literature. Can anyone suggest me what is wrong here? Any kind of help is appreciated.

B Manna

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