Joined: Fri Oct 21, 2016 11:00 am Posts: 3
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oem@viji /usr/local/covalentdock/scripts $ su Password: viji scripts # rm -rf bond viji scripts # rm -rf prep viji scripts # /usr/local/covalentdock/scripts/preprocessing cp: cannot stat '/root/B-bond/autodock/googlecode/covalentdock/scripts/*': No such file or directory cp: cannot stat '../_ligand.mol2': No such file or directory cp: cannot stat '../_receptor.pdb': No such file or directory Processing receptor... /usr/local/covalentdock/scripts/preprocessing: line 15: ./receptor_prep: No such file or directory Processing ligand... Preparing for non-covalent docking files... /usr/local/covalentdock/scripts/preprocessing: line 23: /bin/pythonsh: No such file or directory /usr/local/covalentdock/scripts/preprocessing: line 24: /bin/pythonsh: No such file or directory cp: cannot stat '_receptor_unbond.pdbqt': No such file or directory cp: cannot stat '_ligand_unbond.pdbqt': No such file or directory cp: cannot stat '_unbond.gpf': No such file or directory cp: cannot stat '_unbond.dpf': No such file or directory Preparing for covalent docking files... ls: cannot access '*ligand_bond_*.pdbqt': No such file or directory /usr/local/covalentdock/scripts/preprocessing: line 59: /bin/pythonsh: No such file or directory grep: get_npts: No such file or directory grep: get_npts: No such file or directory grep: get_npts: No such file or directory /usr/local/covalentdock/scripts/preprocessing: line 63: *2: syntax error: operand expected (error token is "*2") /usr/local/covalentdock/scripts/preprocessing: line 64: /bin/pythonsh: No such file or directory grep: _bond.gpf: No such file or directory grep: _bond.gpf: No such file or directory grep: _ligand*.pdbqt: No such file or directory grep: _ligand*.pdbqt: No such file or directory cp: cannot stat '_bond.gpf': No such file or directory cp: cannot stat '_receptor_bond.pdbqt': No such file or directory Preprocessing done!
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