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 Post subject: error
PostPosted: Wed Mar 09, 2016 4:03 pm 
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Joined: Wed Mar 09, 2016 3:56 pm
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hello, can anyone help me, this shows when i am trying to dock ...

Traceback (most recent call last):
File "/home/esm-user/MGLTools-1.5.6rc2/MGLToolsPckgs/ViewerFramework/VF.py", line 898, in tryto
result = command( *args, **kw )
File "/home/esm-user/MGLTools-1.5.6rc2/MGLToolsPckgs/Pmv/editCommands.py", line 1043, in doit
hat = addh.addHydrogens(mol.allAtoms, method=method)
File "/home/esm-user/MGLTools-1.5.6rc2/MGLToolsPckgs/PyBabel/addh.py", line 92, in addHydrogens
Hatoms = self.place_hydrogens1(atoms, num_H_to_add)
File "/home/esm-user/MGLTools-1.5.6rc2/MGLToolsPckgs/PyBabel/addh.py", line 119, in place_hydrogens1
Hat = Hat + self.add_methyl_hydrogen(a, SP3_C_H_DIST)
File "/home/esm-user/MGLTools-1.5.6rc2/MGLToolsPckgs/PyBabel/addh.py", line 303, in add_methyl_hydrogen
c3 = atom2.bonds[1].atom1.coords
File "/home/esm-user/MGLTools-1.5.6rc2/lib/python2.5/UserList.py", line 28, in __getitem__
def __getitem__(self, i): return self.data[i]
IndexError: list index out of range

what can i do????????


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