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PostPosted: Tue Sep 24, 2013 12:54 pm 
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Hello, I am looking for structure of Silicic acid in CHARMM format (PDB/RTF/PAR). I need this for protein-ligand docking. can you lease send it to me. thanking you


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PostPosted: Sun Oct 06, 2013 3:22 am 
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Hi,
You might want to move this question to the autodock forum if you are interested in docking. Otherwise, you should be able to find the structure in for this or most small molecules in the PDB. I can suggest ways to build a small molecule like this from the formula with various websites.
Let us know if you need further help,
Graham


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PostPosted: Mon Oct 07, 2013 8:20 pm 
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Here you go:

HEADER PROTEIN 07-OCT-13 NONE
TITLE NULL
COMPND NULL
SOURCE NULL
KEYWDS NULL
EXPDTA NULL
AUTHOR Marvin
REVDAT 1 07-OCT-13 0
HETATM 1 Si UNK 0 -0.683 1.320 0.000 0.00 0.00 Si+0
HETATM 2 O UNK 0 0.975 1.320 0.000 0.00 0.00 O+0
HETATM 3 O UNK 0 -0.703 2.981 0.000 0.00 0.00 O+0
HETATM 4 O UNK 0 -0.703 -0.341 0.000 0.00 0.00 O+0
HETATM 5 O UNK 0 -2.350 1.320 0.000 0.00 0.00 O+0
CONECT 1 2 3 4 5
CONECT 2 1
CONECT 3 1
CONECT 4 1
CONECT 5 1
MASTER 0 0 0 0 0 0 0 0 5 0 8 0
END

But remember to check it against know chemical and structural parameters, ok?


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PostPosted: Mon Oct 07, 2013 8:59 pm 
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Thanks


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