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PostPosted: Thu Jul 28, 2016 5:13 am 
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Joined: Thu Jul 07, 2016 6:51 am
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Hello,I am using Raccoon2. Once running is complete the status is shifted to "mixed" with description that says, missing JID! followed by server address.
After 5 minutes, the status changes to "completed" but in next step i am unable to download the results.
The rest Raccoon identify the server and performs all the described steps. During download, It works fine, but when it reaches to the status of 100%, i received the following error. Can any one help me how to solve this problem, Thanks for your time.
Error: 11
<type 'exceptions.TypeError'> Exception in Tk callback
Function: <function callit at 0x125c1410> (type: <type 'function'>)
Args: ()
Traceback (innermost last):
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/site-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line 1747, in __call__
return apply(self.func, args)
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/lib-tk/Tkinter.py", line 495, in callit
func(*args)
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/MGLToolsPckgs/CADD/Raccoon2/gui/EF_resultprocessor.py", line 246, in start
stop=self.STOP)
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/MGLToolsPckgs/CADD/Raccoon2/gui/RaccoonVsResults.py", line 119, in generateResults
self.writeLogJson(logfile)
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/MGLToolsPckgs/CADD/Raccoon2/gui/RaccoonVsResults.py", line 219, in writeLogJson
hf.writejson(logname, self.results, compression)
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/MGLToolsPckgs/CADD/Raccoon2/HelperFunctionsN3P.py", line 1377, in writejson
json.dump(data, fp)
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/__init__.py", line 181, in dump
for chunk in iterable:
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 428, in _iterencode
for chunk in _iterencode_dict(o, _current_indent_level):
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 402, in _iterencode_dict
for chunk in chunks:
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 402, in _iterencode_dict
for chunk in chunks:
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 326, in _iterencode_list
for chunk in chunks:
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 402, in _iterencode_dict
for chunk in chunks:
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 402, in _iterencode_dict
for chunk in chunks:
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 326, in _iterencode_list
for chunk in chunks:
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 326, in _iterencode_list
for chunk in chunks:
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 326, in _iterencode_list
for chunk in chunks:
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 436, in _iterencode
o = _default(o)
File "/home/ash/mgltools_x86_64Linux2_1.5.7rc1/lib/python2.7/json/encoder.py", line 178, in default
raise TypeError(repr(o) + " is not JSON serializable")
<type 'exceptions.TypeError'>: array([ -5.10200024, 6.40950012, -15.03433323], dtype=float32) is not JSON serializable


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PostPosted: Thu Feb 02, 2017 11:24 pm 
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Joined: Mon Jul 27, 2015 8:01 pm
Posts: 1
Dear Forum,

I have check with both a Mac 10.10.5 and a Windows machine and I get the same error on both machines...??

Did anyone have a suggestion on how to fix this?


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PostPosted: Thu Feb 09, 2017 1:19 am 
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Joined: Mon Oct 20, 2008 6:34 pm
Posts: 200
This problem is due to a bug in the code that writes the results to files (JSON serialization).

You may want to try to download the new stable 1.5.7 version from here:
http://mgltools.scripps.edu/downloads/t ... /1.5.7/REL

We're fixing other bugs, but this version should be officially released soon.
Hope this helps,

S


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PostPosted: Thu Feb 16, 2017 3:59 pm 
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I think the code contains a bug
Hope someone reveals it


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PostPosted: Mon Jul 17, 2017 9:23 am 
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Joined: Tue Jun 06, 2017 6:04 pm
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I seem to be having the same issue. I'm using the latest version but this error keeps coming up. I guess the developers aren't working on the error.


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