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PostPosted: Wed Oct 28, 2015 1:16 pm 
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Joined: Fri Oct 23, 2015 5:47 am
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Dear, all
I'm new to docking. I dock calcium ion ligand with a calcium binding protein. The protein was bullied from Swiss-model and have no conserved calcium binding site. I want to know, after I receive my docking results. Why Calcium ion have no electrostatic interaction between amino acid residue, but they show Unfavorable Bump.
How to set calcium ion ligand to perform docking for my purpose.


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