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PostPosted: Tue May 27, 2014 12:30 pm 
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Joined: Tue May 27, 2014 12:27 pm
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I am having a problem with the following script (ex09.csh) stopping after the first Docking (out of 10). I am not sure why it doesn't complete the loop, if I remove the line with the autodock4 command, it cycles through the list just fine.
Thanks for any help.

- Miriam

Script ex09.csh below:

!/bin/csh
#
# $Id: ex09.csh,v 1.7 2008/01/10 19:01:24 rhuey Exp $
#

# Create a file with a list of the dockings to run::

cd $VSTROOT/Scripps_59-63/Dockings
/bin/ls > ../etc/docking.list

# For the purposes of this tutorial, instead of running ``autodock3`` as
# you normally would) simply copy the results of a docking that we've
# done for you previously.
# Here am doing the run ....

foreach d (`cat ../etc/docking.list`)
echo $d
cd $d
# echo "autodock4 -p $d.dpf -l $d.dlg"
autodock4 -p $d.dpf -l $d.dlg
# submit.py $d 1
# cp ../../../Results4/dlgs/"$d".dlg .
cd ..
end

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