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PostPosted: Mon Oct 21, 2013 7:56 pm 
Millimolar User
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Joined: Mon Oct 21, 2013 7:48 pm
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Hi All,

I have two similar structures (protein complexes) which I want to compare the two structures using Pymol. I already created a couple of figures to compare them. I've got comment from the marker of my PhD thesis to create a new figure showing a stereo overlay figure for the tow structures to show the differences.
Here is the comment "The two structures of X complexed with peptides from Y show some very interesting differences. However, from the thesis, it was difficult to fully appreciate these differences. Figure 5.11 is probably the best representation, however, even from this figure it is hard to comprehend the difference. For me, a stereo overlay figure would best represent the difference".
In fact, I don't know how to do it.
could you guys help with this.


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