Hi. I'm currently doing a research on protein-ligand docking and I'm new to AutoDock.
I wonder is there any way to see whether there is any conformational change of the protein/ligand so that they can be docked together using AutoDock/MGLTools/any other tools? Or does the binding of ligand causes the protein/ligand change in conformation?
And is there any way to see the conformational/structural changes in graphical view?
Thanks in advance. Your help will be very much appreciated.