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A.A.-Ligand Stablization
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Author:  klr93 [ Thu Jul 16, 2015 5:54 pm ]
Post subject:  A.A.-Ligand Stablization

I'm looking to identify potential similarities/differences in ligand docking in orthologous proteins (some are directly available from PDB, others were generated using various homology modelling platforms). I've typically used PDBePISA to determine accessible residues and the distances between those residues and the ligand. However, the output from Vina does not seem compatible with PISA. Does anyone have any suggestions on how to determine sites of interaction between the ligand prediction from vina and a protein?

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