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 Post subject: ligand Preparation
PostPosted: Sun Feb 02, 2014 1:28 pm 
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Joined: Sun Feb 02, 2014 1:13 pm
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Hi,
I am Priya from IIIM, Jammu. Facing problem in ligand preparing . I have followed all the steps mentioned in your manual.

Ligand > input > open
ligand > Torsion tree> detect root
ligand > Torsion tree> choose torsion
ligand > Torsion tree> set number of torsions
fewest atoms :6
ligand > output > save as pdbqt.

on visualization my molecule (Rediocide A) was missing with certain atoms.

Suggest me the steps how to prepare my ligand and why I am facing this problem.
Hope to get reply soon


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