Here is a software developed by our research team for easily working with AutoDock Vina
which is one of the quickest and reliable softwares available for docking simulations.
Unlike many other free docking softwares, Vina can perform rigid docking simulations at an appreciable speed with good levels of accuracy.
kindly consult the manual for full details
advantages: 1. Virtual screening of any number of compounds
2. Alignment of results according to their score
3. Resumption of work in case of accidental shut down of system of power failure
4. Easy monitoring of progress of work
For software - http://sourceforge.net/projects/audocker/files/