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AutoDock, AutoLigand, MGLTools, Vina, PyRx and more.
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PostPosted: Thu Feb 25, 2016 2:24 pm 
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Joined: Thu Feb 25, 2016 2:09 pm
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Hi, I installed MGLTools in Mac OS X Yosemite, and also Xquartz 2.5.0 for Snow Leopard because higher version of this does not open the MGLTools. However, whenever I try to use auto dock, the XTERM window opens with command prompt bash-3.2$, and after few minutes of running auto dock, it always shuts down with this message:

X connection to /private/tmp/com.apple.launchd.G7dpxVcGSU/org.macosforge.xquartz:0.0 broken (explicit kill or server shutdown).

Is the software compatible with my OS or not? what does this message mean? Can you please help me fix this problem?

thanks!

MBBLyn


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