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PostPosted: Mon Jan 19, 2015 10:53 am 
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Joined: Mon Jan 19, 2015 6:30 am
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Dear List,

I need to do a clustering analysis on different conformations of a ligand. These conformations are not the results of docking studies and I was wondering if it is possible to read in these conformations by AutoDock or AutoDockTool and then do the analysis like those that AutoDock performs on the docking poses generated during its routine docking calculations.
I know this is not directly related to AutoDock, but will appreciate it if you could kindly let me know if it is possible to do this type of analyses using ADT or any other means.

Cheers,
Siavoush


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