The Molecular Graphics Laboratory Forum

When I run ADT.....The following error shows..

Python 2.4 (#60, Nov 30 2004, 11:49:19) [MSC v.1310 32 bit (Intel)] on win32
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IDLE 1.1 ==== No Subprocess ====
>>> ERROR *********************************************
Traceback (most recent call last):
File "C:\Python24\Lib\site-packages\MGLTools\ViewerFramework\VF.py", line 684, in tryto
result = apply( command, args, kw )
File "C:\Python24\Lib\site-packages\MGLTools\Pmv\editCommands.py", line 930, in doit
hat = addh.addHydrogens(mol.allAtoms, method=method)
File "C:\Python24\Lib\site-packages\MGLTools\PyBabel\addh.py", line 92, in addHydrogens
Hatoms = self.place_hydrogens1(atoms, num_H_to_add)
File "C:\Python24\Lib\site-packages\MGLTools\PyBabel\addh.py", line 156, in place_hydrogens1
Hat = Hat + self.add_vinyl_hydrogens(a ,SP2_C_H_DIST)
File "C:\Python24\Lib\site-packages\MGLTools\PyBabel\addh.py", line 444, in add_vinyl_hydrogens
c3 = c2.bonds[1].atom1
File "C:\Python24\lib\UserList.py", line 28, in __getitem__
def __getitem__(self, i): return self.data[i]
IndexError: list index out of range

I use win xp (service pack 3), my machine statistics are P6200 2.13 GHz, 2 GB RAM

Answered this to somone else yesterday (to you actually....lol). Its a common issue that you can find in the forum previously. Look if u'r using the latest release of ADT ( not vina...different softwares), that is 1.5.6rc3. That said, it seems that u'r using an old python version. Update it (I have had good results with 2.5.4). Answered longer in the vina forum.....hope you get a solution.
SSchott