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PostPosted: Mon Jul 12, 2010 7:14 am 
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Dear all,

I installed MGL tools on my Windows 7 machine when it had a Nvidia Geforce 8800GT and it worked fine with no problems. Then a couple of days later, I popped in a new Radeon 5770 and now I can't open MGL Tools. I have tried uninstalling and reinstalling it many times but no dice.

This is the error I get:
C:\Users\David>set MGLPYTHONPATH=C:\Program Files (x86)\MGLTools 1.6.0
C:\Users\David>"C:\Python26\python.exe" "C:\Program Files (x86)\MGLTools 1.6.0\M
GLToolsPckgs\AutoDockTools\bin\runAdt.py"
Run ADT from C:\Program Files (x86)\MGLTools 1.6.0\MGLToolsPckgs\AutoDockTools
Resource file used to customize PMV: C:\Users\David\.mgltools\1.6.0\Pmv\_pmvrc
Traceback (most recent call last):
File "C:\Program Files (x86)\MGLTools 1.6.0\MGLToolsPckgs\AutoDockTools\__init
__.py", line 433, in runADT
title=title, withShell= not interactive, verbose=False, gui=gui)
File "C:\Program Files (x86)\MGLTools 1.6.0\MGLToolsPckgs\Pmv\moleculeViewer.p
y", line 318, in __init__
verbose=verbose, trapExceptions=trapExceptions)
File "C:\Program Files (x86)\MGLTools 1.6.0\MGLToolsPckgs\ViewerFramework\VF.p
y", line 361, in __init__
verbose=verbose)
File "C:\Program Files (x86)\MGLTools 1.6.0\MGLToolsPckgs\ViewerFramework\VFGU
I.py", line 287, in __init__
verbose=verbose,guiMaster=VIEWER_root,)
File "C:\Program Files (x86)\MGLTools 1.6.0\MGLToolsPckgs\DejaVu\Viewer.py", l
ine 658, in __init__
cp = ClippingPlane(self.rootObject, i, self)
File "C:\Program Files (x86)\MGLTools 1.6.0\MGLToolsPckgs\DejaVu\Clip.py", lin
e 42, in __init__
self.id = self.clipPlaneNames[num]
IndexError: list index out of range


Any help please?

Best Regards,
David


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PostPosted: Fri Jul 16, 2010 2:23 pm 
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Posts: 21
It's the problem of ATI's Catalyst driver, which probably no long supports old version of OpenGL, which MGL Tools rely on.


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PostPosted: Fri Jul 16, 2010 5:58 pm 
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Hi David

OpenGL is supposed to be backwards compatible.

would it be possible for you to reproduce your problem and then use the python debugger to find out the value if num?

DejaVu assumes 6 clipping planes as the OpenGL call that is supposed to return the number of supported arbitrary clipping
planes often return 255 but most OpenGL implementation only deal with 6 or 8 such planes

let the error happen. Then in the python shell type

import pdb
pdb.pm()
print num

thanks


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PostPosted: Mon Aug 09, 2010 1:49 am 
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@MichelSanner Sorry for the late reply. I recently received a laptop that when I installed PMV it worked flawlessly but now that I am back on the desktop, I am still having the same issue.

How exactly do I use the Python Debugger? I have tried running runPmv in the Pythin shell from the bin folder in the Pmv folder in the MglPackages folder but it doesn't run.

Any further advice? I really appreciate your time. :)


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PostPosted: Fri Aug 13, 2010 4:21 am 
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For Windows 7 (Win7) - be sure to run the ADTools (ADT) as Administrator (right click the icon). Mine was giving me trouble before doing that and would fail to find 'module Image'.


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PostPosted: Mon Sep 06, 2010 9:14 pm 
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I just wanted to add that I have been having similar difficulties. My machine is also running a 5xxx series Raedon, and I have been unable to debug MGLTools. After the error message is given, it states 'hit enter to continue.' If I attempt to ^C to leave, the debugger can no longer be used.


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PostPosted: Mon Sep 27, 2010 11:25 pm 
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Have similar problem running on Windows 7

C:\Users\Giblet>set MGLPYTHONPATH=C:\Program Files (x86)\MGLTools 1.5.4

C:\Users\Giblet>"C:\Program Files (x86)\Python\python.exe" "C:\Program Files (x8
6)\MGLTools 1.5.4\MGLToolsPckgs\AutoDockTools\bin\runAdt.py"
Run AutoDockTools from C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\Updat
es\nightly_2010_01_21\AutoDockTools
Resource file used to customize PMV: C:\Users\Giblet\.mgltools\1.5.4\Pmv\_pmvrc
Traceback (most recent call last):
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\Updates\nightly_2010
_01_21\AutoDockTools\__init__.py", line 373, in runADT
title=title, withShell= not interactive, verbose=False)
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\Pmv\moleculeViewer.p
y", line 315, in __init__
verbose=verbose, trapExceptions=trapExceptions)
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\ViewerFramework\VF.p
y", line 345, in __init__
verbose=verbose)
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\ViewerFramework\VFGU
I.py", line 277, in __init__
cnf = {"addScenarioButton": False})
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\DejaVu\Viewer.py", l
ine 675, in __init__
cp = ClippingPlane(self.rootObject, i, self)
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\DejaVu\Clip.py", lin
e 42, in __init__
self.id = self.clipPlaneNames[num]
IndexError: list index out of range
hit enter to continue

I open Python Shell and type in commands as MichelSanner suggested and this is what I get

IDLE 1.2.2
>>> import pdb
>>> pdb.pm()

Traceback (most recent call last):
File "<pyshell#1>", line 1, in <module>
pdb.pm()
File "C:\Program Files (x86)\Python\lib\pdb.py", line 1168, in pm
post_mortem(sys.last_traceback)
AttributeError: 'module' object has no attribute 'last_traceback'
>>> print num

Traceback (most recent call last):
File "<pyshell#2>", line 1, in <module>
print num
NameError: name 'num' is not defined
>>>

Still no luck in running ADT in Win 7


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PostPosted: Fri Oct 08, 2010 9:47 pm 
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Posts: 3
I am having the exact same issue on Windows 7, with ATI Radeon 4300.

I have Python 2.5 installed.

Is there any resolution to this issue?!

Code:
C:\windows\system32>"C:\Python25\python.exe" "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\AutoDockTools\bin\runAdt.py"
Run AutoDockTools from C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\AutoDockTools
Resource file used to customize PMV: C:\Users\amandali\.mgltools\1.5.4\Pmv\_pmvrc
Traceback (most recent call last):
  File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\AutoDockTools\__init__.py", line 373, in runADT
    title=title, withShell= not interactive, verbose=False)
  File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\Pmv\moleculeViewer.py", line 315, in __init__
    verbose=verbose, trapExceptions=trapExceptions)
  File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\ViewerFramework\VF.py", line 345, in __init__
    verbose=verbose)
  File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\ViewerFramework\VFGUI.py", line 277, in__init__
    cnf = {"addScenarioButton": False})
  File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\DejaVu\Viewer.py", line 675, in __init__
    cp = ClippingPlane(self.rootObject, i, self)
  File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\DejaVu\Clip.py", line 42, in __init__
    self.id = self.clipPlaneNames[num]
IndexError: list index out of range


Last edited by amanda on Mon Oct 11, 2010 7:04 pm, edited 1 time in total.

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PostPosted: Sat Oct 09, 2010 8:49 pm 
Try the optimized graphics cards drivers at: http://www.omegadrivers.net/

Also try to clean your registry keys(after uninstalling) with for example "Crap Cleaner" and/or Advanced system care free.

I have Windows XP myself with Nvidia 8800GT Gfx card...no problems here. Tried the compatibility option in Win 7?


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PostPosted: Mon Oct 11, 2010 7:57 am 
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Joined: Mon Oct 11, 2010 7:52 am
Posts: 1
Dear All,

I am also having the same issue, getting error on Windows 7

C:\Users\delica>set MGLPYTHONPATH=C:\Program Files (x86)\MGLTools 1.5.4

C:\Users\delica>"C:\Program Files (x86)\Python\python.exe" "C:\Program Files (x8
6)\MGLTools 1.5.4\MGLToolsPckgs\AutoDockTools\bin\runAdt.py"
Run AutoDockTools from C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\Updat
es\nightly_2010_01_21\AutoDockTools
Resource file used to customize PMV: C:\Users\Giblet\.mgltools\1.5.4\Pmv\_pmvrc
Traceback (most recent call last):
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\Updates\nightly_2010
_01_21\AutoDockTools\__init__.py", line 373, in runADT
title=title, withShell= not interactive, verbose=False)
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\Pmv\moleculeViewer.p
y", line 315, in __init__
verbose=verbose, trapExceptions=trapExceptions)
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\ViewerFramework\VF.p
y", line 345, in __init__
verbose=verbose)
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\ViewerFramework\VFGU
I.py", line 277, in __init__
cnf = {"addScenarioButton": False})
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\DejaVu\Viewer.py", l
ine 675, in __init__
cp = ClippingPlane(self.rootObject, i, self)
File "C:\Program Files (x86)\MGLTools 1.5.4\MGLToolsPckgs\DejaVu\Clip.py", lin
e 42, in __init__
self.id = self.clipPlaneNames[num]
IndexError: list index out of range
hit enter to continue

Can anyone please tell me to fix this issue.. It would be highly appreciated..

Thanks,
Delica


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